miRBase entry: ppa-mir-183

Stem-loop ppa-mir-183


Accession
MI0003094
Description
Pan paniscus ppa-mir-183 precursor miRNA
Gene family
MIPF0000066; mir-183


Sequence

ccgcagagugugacuccuguucugugUAUGGCACUGGUAGAAUUCACUGugaacagucucagucagugaauuaccgaagggccauaaacagagcagagacagauccacga
.((..((.(.((.(((.((((((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))))))))).)).)))..)).

Structure
c  ca  g g  a   c        g      A  --    GA        --   ac 
 cg  ga u ug cuc uguucugu UAUGGC CU  GGUA  AUUCACUG  uga  a
 ||  || | || ||| |||||||| |||||| ||  ||||  ||||||||  |||   
 gc  cu a ac gag acgagaca auaccg ga  ccau  uaagugac  acu  g
a  ac  - g  a   -        a      g  ag    --        ug   cu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr7: 134258009-134258118 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppa-mir-183
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppa-miR-183

Accession MIMAT0002793
Description Pan paniscus ppa-miR-183 mature miRNA
Sequence 27 - UAUGGCACUGGUAGAAUUCACUG - 49
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24