miRBase entry: ppa-mir-92a-2

Stem-loop ppa-mir-92a-2


Accession
MI0003104
Description
Pan paniscus ppa-mir-92a-2 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

ucaucccuggguggggauuuguugcauuacuuguguucuauauaaagUAUUGCACUUGUCCCGGCCUGUggaaga
((.(((.(((((.(((((..((.(((.(((((((((...)))).))))).)))))..))))).))))).))).))

Structure
  a   c     g     uu  u   u     -    u 
uc ucc ugggu gggau  gu gca uacuu gugu  
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uaua  
  a   U     G     UU  -   U     a    u 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chrX: 133615832-133615906 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppa-mir-92a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppa-miR-92a

Accession MIMAT0002685
Description Pan paniscus ppa-miR-92a mature miRNA
Sequence 48 - UAUUGCACUUGUCCCGGCCUGU - 69
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24