miRBase entry: hsa-mir-516b-1

Stem-loop hsa-mir-516b-1


Accession
MI0003172
Symbol
HGNC: MIR516B1
Description
Homo sapiens hsa-mir-516b-1 precursor miRNA
Gene family
MIPF0000020; mir-515

Literature search
18 open access papers mention hsa-mir-516b-1
(36 sentences)

Sequence

488 reads, 30 reads per million, 26 experiments
ucucaggcugugaccAUCUGGAGGUAAGAAGCACUUUcuguuuugugaaagaaaagaaagUGCUUCCUUUCAGAGGGUuacucuuugaga
(((((((..((((((.((((((((...((((((((((((.((((.....)))).)))))))))))))))))))).))))))..)))))))

Structure
       cu      A        UAA            g    g 
ucucagg  gugacc UCUGGAGG   GAAGCACUUUcu uuuu u
|||||||  |||||| ||||||||   |||||||||||| |||| g
agaguuu  cauUGG AGACUUUC   CUUCGUgaaaga aaga a
       cu      G        ---            a    a 


Annotation confidence Not enough data
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Genome context
chr19: 53736845-53736934 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from hsa-mir-516b-1
Name Accession Chromosome Start End Strand Confidence




Disease association
hsa-mir-516b-1 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-516b-5p

Accession MIMAT0002859
Description Homo sapiens hsa-miR-516b-5p mature miRNA
Sequence 16 - AUCUGGAGGUAAGAAGCACUUU - 37
Evidence experimental
array-cloned [1], cloned [2]
Database links
Predicted targets

Mature hsa-miR-516b-3p

Accession MIMAT0002860
Description Homo sapiens hsa-miR-516b-3p mature miRNA
Sequence 61 - UGCUUCCUUUCAGAGGGU - 78
Evidence experimental
array-cloned [1]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 15965474
    Identification of hundreds of conserved and nonconserved human microRNAs
    "Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z"
    "Nat Genet (2005) 37:766-770