miRBase entry: osa-MIR529a

Stem-loop osa-MIR529a


Accession
MI0003202
Description
Oryza sativa osa-MIR529a precursor miRNA
Gene family
MIPF0000388; MIR529

Literature search
21 open access papers mention osa-MIR529a
(62 sentences)

Sequence

459 reads, 331 reads per million, 2 experiments
gaagaagagagagaguacagccuuaguucagaucacauaugacuaucuuuugcgagucugaucgauacucugaugaaggCUGUACCCUCUCUCUUCUUC
(((((((((((((.((((((((((...(((((((..((..((((..(....)..))))..)).))...)))))..)))))))))).)))))))))))))

Structure
             a          agu     ---  ac  au    au u 
gaagaagagagag guacagccuu   ucaga   uc  au  gacu  c u
||||||||||||| ||||||||||   |||||   ||  ||  ||||  |  
CUUCUUCUCUCUC CAUGUCggaa   agucu   ag  ua  cuga  g u
             C          -gu     cau  -c  gu    gc u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr2: 16227805-16227903 [+]

Database links

Mature osa-miR529a

Accession MIMAT0002885
Description Oryza sativa osa-miR529a mature miRNA
Sequence 80 - CUGUACCCUCUCUCUUCUUC - 99
Evidence experimental
Northern [1]
Database links

References

  1. PubMed ID: 16126864
    Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice
    "Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X"
    "Plant Physiol (2005) 139:296-305