Stem-loop sequence dre-mir-489

Accession

MI0003256 (change log)

Description

Danio rerio miR-489 stem-loop

Gene family

MIPF0000111; mir-489

Stem-loop

   acugacu     --g     ---c   ug             c       ---   u 
5'        ugagu   guggc    ugg  gucguauguauga gucauuu   acu c
          |||||   |||||    |||  ||||||||||||| |||||||   |||  
3'        acucg   caucg    auc  cggcauguauacu cagugag   uga a
   ----acu     gua     ucaa   gu             a       guu   a 

Deep sequencing

286 reads, 0 reads per million, 10 experiments

Confidence

Annotation confidence: not enough data

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Comments

miR-489 was predicted in zebrafish based on homology with a verified mammalian sequence (Mihaela Zavolan, personal communication), and later verified experimentally [1].

Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr19: 40781168-40781271 [-]	sense OTTDART00000023453 ; calcr-001; intron 2 ENSDART00000051943 ; calcr-201; intron 1 ENSDART00000131471 ; calcr-001; intron 2
KZ115596.1: 146317-146420 [-]	sense OTTDART00000023453 ; calcr-001; intron 2 ENSDART00000051943 ; calcr-201; intron 1 ENSDART00000131471 ; calcr-001; intron 2

Database links

• EntrezGene:mir489
• EntrezGene:mir489
• RNAcentral:URS000075D3EE_7955
• miRBase Tracker:MI0003256

Mature sequence dre-miR-489

• Accession: MIMAT0002940
• Sequence: 60 - agugacaucauauguacggcugc - 82
• Deep sequencing: 274 reads, 10 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS000075E608_7955
• Predicted targets:
  • TargetScanFish:dre-miR-489

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).