Stem-loop dre-mir-135b

Accession

MI0003364

Description

Danio rerio dre-mir-135b precursor miRNA

Literature search

6 open access papers mention dre-mir-135b
(16 sentences)

Sequence

1353 reads, 63 reads per million, 8 experiments

cucuuugccccgUAUGGCUUUUUAUUCCUAUCUGagaauugcucaggacucAUAUAGGGAUGGAAGCCAUGCAgggcugggg
((((..((((.(((((((((((.(((((((((((((.....))))).......))))))))))))))))))).)))).))))

Structure

    uu    c           U        -------     a 
cucu  gccc gUAUGGCUUUU AUUCCUAU       CUGag a
||||  |||| ||||||||||| ||||||||       ||||| u
gggg  cggg CGUACCGAAGG UAGGGAUA       gacuc u
    -u    A           -        UAcucag     g 

Annotation confidence High

Comments

This zebrafish miRNA sequence is predicted based on homology with a verified mammalian sequence (Mihaela Zavolan, personal communication).

Genome context

chr8: 26005588-26005669 [+]

Mature dre-miR-135b-5p

• Accession: MIMAT0003032
• Description: Danio rerio dre-miR-135b-5p mature miRNA
• Sequence: 13 - UAUGGCUUUUUAUUCCUAUCUG - 34
• Evidence: not_experimental

Mature dre-miR-135b-3p

• Accession: MIMAT0032006
• Description: Danio rerio dre-miR-135b-3p mature miRNA
• Sequence: 52 - AUAUAGGGAUGGAAGCCAUGCA - 73
• Evidence: not_experimental

References