miRBase entry: dre-mir-181a-2

Stem-loop dre-mir-181a-2


Accession
MI0003387
Description
Danio rerio dre-mir-181a-2 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
18 open access papers mention dre-mir-181a-2
(68 sentences)

Sequence

779476 reads, 51093 reads per million, 11 experiments
uuggugAACAUUCAACGCUGUCGGUGAGUuuugcgcuucuguaacaaACCAUCGACCGUUGACUGUACCcugagggugg
.......(((.((((((..(((((((.(((((((......)))..))))))))))))))))).)))((((...))))..

Structure
------uuggugA   U      CU       A    --   gc 
             ACA UCAACG  GUCGGUG GUuu  ugc  u
             ||| ||||||  ||||||| ||||  |||   
             UGU AGUUGC  CAGCUAC CAaa  aug  u
ggugggagucCCA   C      --       -    ca   uc 


Annotation confidence High
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Comments
This zebrafish miRNA sequence is predicted based on homology with a verified mammalian sequence (Mihaela Zavolan, personal communication).

Genome context
chr8: 53023539-53023617 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-181a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-181a-5p

Accession MIMAT0001623
Description Danio rerio dre-miR-181a-5p mature miRNA
Sequence 7 - AACAUUCAACGCUGUCGGUGAGU - 29
Evidence not_experimental

Mature dre-miR-181a-2-3p

Accession MIMAT0032007
Description Danio rerio dre-miR-181a-2-3p mature miRNA
Sequence 48 - ACCAUCGACCGUUGACUGUACC - 69
Evidence not_experimental
Database links

References