miRBase entry: rno-mir-224

Stem-loop rno-mir-224


Accession
MI0003483
Description
Rattus norvegicus rno-mir-224 precursor miRNA
Gene family
MIPF0000088; mir-224

Literature search
11 open access papers mention rno-mir-224
(82 sentences)

Sequence

5603 reads, 23 reads per million, 357 experiments
gggcuuuCAAGUCACUAGUGGUUCCGUUUaguagaugguuuuugcauuguuucaAAAUGGUGCCCUAGUGACUACAaagccc
(((((((..(((((((((.(((.((((((.(..((((.......))))....).)))))).))))))))))))..)))))))

Structure
       CA         U   U      a --ua    gu 
gggcuuu  AGUCACUAG GGU CCGUUU g    gaug  u
|||||||  ||||||||| ||| |||||| |    ||||  u
cccgaaA  UCAGUGAUC CCG GGUAAA c    uuac  u
       CA         -   U      a uuug    gu 


Annotation confidence High
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Genome context
chrX: 152223754-152223835 [-]

Database links

Mature rno-miR-224-5p

Accession MIMAT0003119
Description Rattus norvegicus rno-miR-224-5p mature miRNA
Sequence 8 - CAAGUCACUAGUGGUUCCGUUU - 29
Evidence experimental
SOLiD [2]

Mature rno-miR-224-3p

Accession MIMAT0017200
Description Rattus norvegicus rno-miR-224-3p mature miRNA
Sequence 55 - AAAUGGUGCCCUAGUGACUACA - 76
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267