miRBase entry: rno-mir-483

Stem-loop rno-mir-483


Accession
MI0003485
Description
Rattus norvegicus rno-mir-483 precursor miRNA
Gene family
MIPF0000180; mir-483

Literature search
12 open access papers mention rno-mir-483
(204 sentences)

Sequence

3868 reads, 21 reads per million, 245 experiments
gagggggAAGACGGGAGAAGAGAAGGGAGugguuuuugggugccuCACUCCUCCCCUCCCGUCUUGUucucuc
(((((((((((((((((..((....((((((((........)))..)))))))..)))))))))).)))))))

Structure
       -          AA  GAAG     --   uuu 
gaggggg AAGACGGGAG  GA    GGAGu  ggu   u
||||||| ||||||||||  ||    |||||  |||    
cucucuU UUCUGCCCUC  CU    CCUCA  ccg   g
       G          CC  ----     Cu   ugg 


Annotation confidence High
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Genome context
chr1: 215832088-215832160 [-]

Database links

Mature rno-miR-483-5p

Accession MIMAT0017201
Description Rattus norvegicus rno-miR-483-5p mature miRNA
Sequence 8 - AAGACGGGAGAAGAGAAGGGAG - 29
Evidence experimental
SOLiD [1]

Mature rno-miR-483-3p

Accession MIMAT0003121
Description Rattus norvegicus rno-miR-483-3p mature miRNA
Sequence 46 - CACUCCUCCCCUCCCGUCUUGU - 67
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249