miRBase entry: mmu-mir-486a

Stem-loop mmu-mir-486a


Accession
MI0003493
Description
Mus musculus mmu-mir-486a precursor miRNA
Gene family
MIPF0000220; mir-486

Literature search
70 open access papers mention mmu-mir-486a
(605 sentences)

Sequence

1785599 reads, 2476 reads per million, 102 experiments
cagccagcucugaucucgcccucccugaggggUCCUGUACUGAGCUGCCCCGAGguccuucacugugcucagcuCGGGGCAGCUCAGUACAGGAUgcgucagggugggagacaacggggaacaagcca
..((...(((((...((.(((.((((((.(.(((((((((((((((((((((((........(((....)))))))))))))))))))))))))).).)))))).))).))...))))).....))..

Structure
ca  --cag     auc  g   u      g g                       guccuuca   u 
  gc     cucug   uc ccc cccuga g gUCCUGUACUGAGCUGCCCCGAG        cug g
  ||     |||||   || ||| |||||| | |||||||||||||||||||||||        |||  
  cg     ggggc   ag ggg gggacu c UAGGACAUGACUCGACGGGGCuc        gac c
ac  aacaa     aac  a   u      g g                       --------   u 


Annotation confidence High
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Genome context
chr8: 23142555-23142682 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-486a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-486a-5p

Accession MIMAT0003130
Description Mus musculus mmu-miR-486a-5p mature miRNA
Sequence 33 - UCCUGUACUGAGCUGCCCCGAG - 54
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-486a-3p

Accession MIMAT0017206
Description Mus musculus mmu-miR-486a-3p mature miRNA
Sequence 75 - CGGGGCAGCUCAGUACAGGAU - 95
Evidence experimental
Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009