Accession
MI0003496
Description
Physcomitrella patens
ppt-MIR319a precursor miRNA
Literature search
5 open access papers mention ppt-MIR319a
(23 sentences)
(23 sentences)
Sequence
119033
reads,
4656.0
reads per million, 10 experiments
guggagcuccguuucgguccaauagUGGCUGCGACGGAAGGUGGUCCcgcugccgaaucacacguccggguugcuuaucggggcagggccccgauacgguauccgaacguuugucccgggaacuggUCGACCUUCCGCCCGGCGUCUcuuggacugaagggagcuccac
((((((((((.(((((((((((.((..((((.(.((((((((.(.((.(.(.(((...((.((((.(((((.((((((((((((...))))))))).)))))))).)))).))...))).).).)).).))))))))).))))..)).)))))))))))))))))))))
((((((((((.(((((((((((.((..((((.(.((((((((.(.((.(.(.(((...((.((((.(((((.((((((((((((...))))))))).)))))))).)))).))...))).).).)).).))))))))).))))..)).)))))))))))))))))))))
Structure
g u UG C A G U c c g aau c c u - a
guggagcucc uuucgguccaa ag GCUG G CGGAAGGU G CC g u ccg ca acgu cgggu gcu uaucggggc
|||||||||| ||||||||||| || |||| | |||||||| | || | | ||| || |||| ||||| ||| ||||||||| g
caccucgagg gaagucagguu UC CGGC C GCCUUCCA C gg c a ggc gu ugca gccua ugg auagccccg
- c UG C - G U u a g ccu u a - c g
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr18: 5641294-5641462 [+]
Database links
Mature ppt-miR319a-5p
| Accession | MIMAT0053636 |
| Description | Physcomitrella patens ppt-miR319a-5p mature miRNA |
| Sequence | 26 - UGGCUGCGACGGAAGGUGGUCC - 47 |
| Evidence |
experimental
unknown |
Mature ppt-miR319a-3p
| Accession | MIMAT0003133 |
| Description | Physcomitrella patens ppt-miR319a-3p mature miRNA |
| Sequence | 127 - UCGACCUUCCGCCCGGCGUCU - 147 |
| Evidence |
experimental
cloned [1], 454 [3] |
References
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