miRBase entry: rno-mir-376a

Stem-loop rno-mir-376a


Accession
MI0003545
Description
Rattus norvegicus rno-mir-376a precursor miRNA
Gene family
MIPF0000091; mir-368

Literature search
9 open access papers mention rno-mir-376a
(72 sentences)

Sequence

23710 reads, 75 reads per million, 332 experiments
ugauauuuaaaaGGUAGAUUCUCCUUCUAUGAGuacaauauuaaugacuaAUCGUAGAGGAAAAUCCACGUuuucaguauca
(((((((.((((.((.((((.((((.((((((...................)))))))))).)))).)).)))).)))))))

Structure
       u    G  A    C    U      Guacaaua 
ugauauu aaaa GU GAUU UCCU CUAUGA        u
||||||| |||| || |||| |||| ||||||        u
acuauga uuuU CA CUAA AGGA GAUGCU        a
       c    G  C    A    -      Aaucagua 


Annotation confidence High
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Genome context
chr6: 133873605-133873686 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from rno-mir-376a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-376a-5p

Accession MIMAT0003197
Description Rattus norvegicus rno-miR-376a-5p mature miRNA
Sequence 13 - GGUAGAUUCUCCUUCUAUGAG - 33
Evidence experimental
SOLiD [3]

Mature rno-miR-376a-3p

Accession MIMAT0003198
Description Rattus norvegicus rno-miR-376a-3p mature miRNA
Sequence 51 - AUCGUAGAGGAAAAUCCACGU - 71
Evidence experimental
cloned [2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267