miRBase entry: hsa-mir-548a-1

Stem-loop hsa-mir-548a-1


Accession
MI0003593
Symbol
HGNC: MIR548A1
Description
Homo sapiens hsa-mir-548a-1 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
56 open access papers mention hsa-mir-548a-1
(171 sentences)

Sequence

6120 reads, 151 reads per million, 69 experiments
ugcagggagguauuaaguuggugcaaaaguaauugugauuuuugccauuaaaaguaacgaCAAAACUGGCAAUUACUUUUGCaccaaaccugguauu
........(((((((.((((((((((((((((((((.(.(((((.(.(((....))).).))))).).))))))))))))))))).))).)))))))

Structure
ugcaggga       a   -                 g u     c a   a 
        gguauua guu ggugcaaaaguaauugu a uuuug c uua a
        ||||||| ||| ||||||||||||||||| | ||||| | |||  
        uuauggu caa ccaCGUUUUCAUUAACG U AAAAC g aau a
--------       c   a                 G C     a c   g 


Annotation confidence Not enough data
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Genome context
chr6: 18571784-18571880 [+]

Disease association
hsa-mir-548a-1 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-548a-3p

Accession MIMAT0003251
Description Homo sapiens hsa-miR-548a-3p mature miRNA
Sequence 61 - CAAAACUGGCAAUUACUUUUGC - 82
Evidence experimental
SAGE [1], cloned [2]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16505370
    The colorectal microRNAome
    "Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE"
    "Proc Natl Acad Sci U S A (2006) 103:3687-3692