Stem-loop sequence hsa-mir-590

Accession

MI0003602 (change log)

Symbol

HGNC:MIR590

Description

Homo sapiens miR-590 stem-loop

Gene family

MIPF0000418; mir-590

Literature search

68 open access papers mention hsa-mir-590
(407 sentences)

Stem-loop

   --------uagc        a  g       u       g     ua   u 
5'             cagucaga au agcuuau cauaaaa ugcag  ugg g
               |||||||| || ||||||| ||||||| |||||  ||| a
3'             guuagucu ug ucgaaua guauuuu auguc  acu a
   acgacguacaaa        c  a       u       a     ua   g 

Deep sequencing

112191 reads, 271 reads per million, 155 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr7: 74191198-74191294 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000314560 ; NCF1-001; intron 1

  OTTHUMT00000343530 ; NCF1-015; intron 1

  OTTHUMT00000343529 ; NCF1-014; intron 1

  OTTHUMT00000343436 ; NCF1-007; intron 1

  OTTHUMT00000314561 ; NCF1-002; intron 1

  OTTHUMT00000343438 ; NCF1-009; intron 1

  OTTHUMT00000314562 ; NCF1-003; exon 1

  ENST00000289473 ; NCF1-001; intron 1

  ENST00000438106 ; NCF1-015; intron 1

  ENST00000433458 ; NCF1-014; intron 1

  ENST00000449343 ; NCF1-007; intron 1

  ENST00000398421 ; NCF1-002; intron 1

  ENST00000455062 ; NCF1-009; intron 1

  ENST00000443956 ; NCF1-003; exon 1

  antisense

  ENST00000380775 ; STAG3L2-202; intron 8

Database links

• EntrezGene:MIR590
• HGNC:MIR590
• RNAcentral:URS00004AE041_9606
• miRBase Tracker:MI0003602

Mature sequence hsa-miR-590-5p

• Accession: MIMAT0003258
• Previous IDs: hsa-miR-590
• Sequence: 16 - gagcuuauucauaaaagugcag - 37
• Deep sequencing: 51503 reads, 152 experiments
• Evidence: experimental; Microarray [1], SAGE [1], cloned [2]
• Database links:
  • RNAcentral:URS00005CACA0_9606
• Predicted targets:
  • TargetMiner:hsa-miR-590-5p
  • TargetScanVert:hsa-miR-590-5p
  • miRDB:hsa-miR-590-5p
  • microrna.org:hsa-miR-590-5p

Mature sequence hsa-miR-590-3p

• Accession: MIMAT0004801
• Sequence: 56 - uaauuuuauguauaagcuagu - 76
• Deep sequencing: 60488 reads, 151 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS0000272039_9606
• Predicted targets:
  • TargetMiner:hsa-miR-590-3p
  • TargetScanVert:hsa-miR-590-3p
  • miRDB:hsa-miR-590-3p
  • microrna.org:hsa-miR-590-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).