Stem-loop sequence hsa-mir-593

Accession

MI0003605 (change log)

Symbol

HGNC:MIR593

Description

Homo sapiens miR-593 stem-loop

Gene family

MIPF0000503; mir-593

Literature search

12 open access papers mention hsa-mir-593
(63 sentences)

Stem-loop

   -------c      aaucugu    c  c    a     ug   agccc       u 
5'         ccccag       cagg ac agcc ggcau  cuc     guuuccc c
           ||||||       |||| || |||| |||||  |||     |||||||  
3'         gggguc       gucu ug uugg ucgug  gag     cgagggg u
   uccucuuu      -------    c  u    g     gu   --gaa       g 

Deep sequencing

16 reads, 0 reads per million, 13 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr7: 128081861-128081960 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR593
• HGNC:MIR593
• miRBase Tracker:MI0003605

Mature sequence hsa-miR-593-5p

• Accession: MIMAT0003261
• Previous IDs: hsa-miR-593;hsa-miR-593*
• Sequence: 16 - aggcaccagccaggcauugcucagc - 40
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • TargetMiner:hsa-miR-593-5p
  • TargetScanVert:hsa-miR-593-5p
  • miRDB:hsa-miR-593-5p
  • microrna.org:hsa-miR-593-5p

Mature sequence hsa-miR-593-3p

• Accession: MIMAT0004802
• Previous IDs: hsa-miR-593
• Sequence: 79 - ugucucugcugggguuucu - 97
• Deep sequencing: 10 reads, 9 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • TargetMiner:hsa-miR-593-3p
  • TargetScanVert:hsa-miR-593-3p
  • miRDB:hsa-miR-593-3p
  • microrna.org:hsa-miR-593-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).