miRBase entry: hsa-mir-548a-3

Stem-loop hsa-mir-548a-3


Accession
MI0003612
Symbol
HGNC: MIR548A3
Description
Homo sapiens hsa-mir-548a-3 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
56 open access papers mention hsa-mir-548a-3
(170 sentences)

Sequence

6540 reads, 116 reads per million, 70 experiments
ccuagaauguuauuaggucggugcAAAAGUAAUUGCGAGUUUUACCauuacuuucaauggCAAAACUGGCAAUUACUUUUGCaccaacguaauacuu
..........(((((.((.(((((((((((((((((.((((((.(((((......))))).)))))).))))))))))))))))).)).)))))...

Structure
ccuagaaugu     g  c                 G      A     ac 
          uauua gu ggugcAAAAGUAAUUGC AGUUUU CCauu  u
          ||||| || ||||||||||||||||| |||||| |||||   
          auaau ca ccaCGUUUUCAUUAACG UCAAAA gguaa  u
-------uuc     g  a                 G      C     cu 


Annotation confidence High
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Genome context
chr8: 104484369-104484465 [-]

Disease association
hsa-mir-548a-3 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-548a-3p

Accession MIMAT0003251
Description Homo sapiens hsa-miR-548a-3p mature miRNA
Sequence 61 - CAAAACUGGCAAUUACUUUUGC - 82
Evidence experimental
SAGE [1], cloned [2]
Database links
Predicted targets

Mature hsa-miR-548a-5p

Accession MIMAT0004803
Description Homo sapiens hsa-miR-548a-5p mature miRNA
Sequence 25 - AAAAGUAAUUGCGAGUUUUACC - 46
Evidence experimental
cloned [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16505370
    The colorectal microRNAome
    "Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE"
    "Proc Natl Acad Sci U S A (2006) 103:3687-3692