Stem-loop sequence hsa-mir-657

Accession

MI0003681 (change log)

Symbol

HGNC:MIR657

Description

Homo sapiens miR-657 stem-loop

Gene family

MIPF0000498; mir-657

Literature search

10 open access papers mention hsa-mir-657
(11 sentences)

Stem-loop

   guguaguagagcua        --   u        agcguggaccgguccgggu 
5'               ggaggaga  ggg ccuggaga                   g
                 ||||||||  ||| ||||||||                   g
3'               ucuccucu  ccc ggaucucu                   g
   -------------g        ua   c        cccacucuuggacggccuu 

Deep sequencing

65 reads, 7.41 reads per million, 27 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr17: 81125276-81125373 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000438910 ; AC139099.4-001; exon 3

  ENST00000572343 ; AC139099.4-001; exon 3

Clustered miRNAs

< 10kb from hsa-mir-657

• hsa-mir-1250: chr17: 81133196-81133308 [-]
• hsa-mir-338: chr17: 81125883-81125949 [-]
• hsa-mir-3065: chr17: 81125877-81125955 [+]
• hsa-mir-657: chr17: 81125276-81125373 [-]

Database links

• EntrezGene:MIR657
• HGNC:MIR657
• miRBase Tracker:MI0003681

Mature sequence hsa-miR-657

• Accession: MIMAT0003335
• Sequence: 61 - ggcagguucucacccucucuagg - 83
• Deep sequencing: 6 reads, 5 experiments
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • TargetMiner:hsa-miR-657
  • TargetScanVert:hsa-miR-657
  • miRDB:hsa-miR-657
  • microrna.org:hsa-miR-657

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).