Stem-loop sequence hcmv-mir-US4

AccessionMI0003687 (change log)
DescriptionHuman cytomegalovirus miR-US4 stem-loop
Stem-loop 
               u   c   c  g   a    -     - ga 
5' cgugucgcgaca gga gug ag ggg uguc ugucg c  u
   |||||||||||| ||| ||| || ||| |||| ||||| |   
3' guacagcgcugu ucu cac uc ccc acag guagu g  a
               c   c   a  g   g    u     u ag
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (EMBL:X17403.1) Overlapping transcripts
HEHCMVCG: 195149-195232 [+]
intergenic
Clustered miRNAs
< 10kb from hcmv-mir-US4
hcmv-mir-US4HEHCMVCG: 195149-195232 [+]
hcmv-mir-US5-1HEHCMVCG: 196060-196125 [+]
hcmv-mir-US5-2HEHCMVCG: 196189-196253 [+]
Database links

Mature sequence hcmv-miR-US4-5p

Accession MIMAT0003341
Sequence

13 -  

uggacgugcagggggaugucug

 - 34

Get sequence
Evidence experimental; Northern [1], Illumina [2-3]

Mature sequence hcmv-miR-US4-3p

Accession MIMAT0026628
Sequence

52 -  

ugacagcccgcuacaccucu

 - 71

Get sequence
Evidence experimental; Illumina [3]

References

1
PMID:16140786 "Identification and characterization of human cytomegalovirus-encoded microRNAs" Grey F, Antoniewicz A, Allen E, Saugstad J, McShea A, Carrington JC, Nelson J J Virol. 79:12095-12099(2005).
2
PMID:22013051 "High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection" Stark TJ, Arnold JD, Spector DH, Yeo GW J Virol. 86:226-235(2012).
3
PMID:22715351 "The microRNA Transcriptome of Human Cytomegalovirus (HCMV)" Meshesha MK, Veksler-Lublinsky I, Isakov O, Reichenstein I, Shomron N, Kedem K, Ziv-Ukelson M, Bentwich Z, Avni YS Open Virol J. 6:38-48(2012).