Stem-loop sequence dre-mir-135a

Accession

MI0003692 (change log)

Description

Danio rerio miR-135a stem-loop

Gene family

MIPF0000028; mir-135

Literature search

3 open access papers mention dre-mir-135a
(4 sentences)

Stem-loop

   -----------aca    u     c   -      uu             a g ga 
5'               gcug cgugu uua uggcuu  uauuccuauguga g u  a
                 |||| ||||| ||| ||||||  ||||||||||||| | |   
3'               ugac gcaca aau accgaa  auagggauguacu c g  c
   uuucgacuaaagac    -     -   c      -c             - g aa 

Deep sequencing

303 reads, 12.5 reads per million, 8 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr25: 31044110-31044207 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir135a
• EntrezGene:mir135a
• RNAcentral:URS000075E63D_7955
• miRBase Tracker:MI0003692

Mature sequence dre-miR-135a

• Accession: MIMAT0003348
• Sequence: 16 - uauggcuuuuuauuccuauguga - 38
• Deep sequencing: 300 reads, 8 experiments
• Evidence: experimental; array [1]
• Database links:
  • RNAcentral:URS00000DF6D0_7955
• Predicted targets:
  • TargetScanFish:dre-miR-135a

References

1. PMID:15919954 "MicroRNA expression in zebrafish embryonic development" Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH Science. 309:310-311(2005).