miRBase entry: gga-mir-146b

Stem-loop gga-mir-146b


Accession
MI0003695
Description
Gallus gallus gga-mir-146b precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
14 open access papers mention gga-mir-146b
(59 sentences)

Sequence

235676 reads, 4181 reads per million, 5 experiments
ggacuggcugcuuggcuuUGAGAACUGAAUUCCAUAGGCGuuaaagcauccaaaaaugCCCUAUGGAUUCAGUUCUGCaguugggcagcaaauaaaccuccagcc
((.((((((((((((((...((((((((((.(((((((((((............)))).)))))))))))))))))..)))))))))))...........)))))

Structure
  a   -----------           uUG          U       -    aaagc 
gg cug           gcugcuuggcu   AGAACUGAAU CCAUAGG CGuu     a
|| |||           |||||||||||   |||||||||| ||||||| ||||      
cc gac           cgacggguuga   UCUUGACUUA GGUAUCC guaa     u
  -   cuccaaauaaa           -CG          -       C    aaacc 


Annotation confidence High
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Genome context
chr6: 23143386-23143490 [+]

Database links

Mature gga-miR-146b-5p

Accession MIMAT0003351
Description Gallus gallus gga-miR-146b-5p mature miRNA
Sequence 19 - UGAGAACUGAAUUCCAUAGGCG - 40
Evidence experimental
cloned [2]
Database links
Predicted targets

Mature gga-miR-146b-3p

Accession MIMAT0003724
Description Gallus gallus gga-miR-146b-3p mature miRNA
Sequence 59 - CCCUAUGGAUUCAGUUCUGC - 78
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015

  2. PubMed ID: 16750530
    Identification of microRNAs from different tissues of chicken embryo and adult chicken
    "Xu H, Wang X, Du Z, Li N"
    "FEBS Lett (2006) 580:3610-3616