Stem-loop sequence gga-mir-365-2

Accession

MI0003704 (change log)

Description

Gallus gallus miR-365-2 stem-loop

Gene family

MIPF0000061; mir-365

Literature search

4 open access papers mention gga-mir-365-2
(20 sentences)

Stem-loop

   --   ---a       a        ac   c       -----    u   u 
5'   ggc    gcaagaa aaugaggg  uuu aggggca     gcug guu u
     |||    ||||||| ||||||||  ||| |||||||     |||| ||| a
3'   cug    cguucuu uuauuccu  aaa uccccgu     ugac caa c
   aa   guaa       g        aa   -       aauac    c   u 

Deep sequencing

985 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr18: 6504853-6504948 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR365-2
• miRBase Tracker:MI0003704

Mature sequence gga-miR-365-2-5p

• Accession: MIMAT0031075
• Sequence: 16 - gagggacuuucaggggcagcugu - 38
• Deep sequencing: 217 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-365-2-5p
  • miRDB:gga-miR-365-2-5p

Mature sequence gga-miR-365-3p

• Accession: MIMAT0003361
• Sequence: 57 - uaaugccccuaaaaauccuuau - 78
• Deep sequencing: 1534 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-365-3p
  • miRDB:gga-miR-365-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).