Stem-loop sequence gga-mir-490

Accession

MI0003709 (change log)

Description

Gallus gallus miR-490 stem-loop

Gene family

MIPF0000229; mir-490

Literature search

2 open access papers mention gga-mir-490
(4 sentences)

Stem-loop

   aa  uc           c      --         g   caag   a 
5'   gu  augguucgaca caugga  ucuccaggu ggu    auu u
     ||  ||||||||||| ||||||  ||||||||| |||    ||| a
3'   ca  ugucgaguugu guaccu  ggaggucca cca    uag g
   aa  cu           c      ca         a   --ca   a 

Deep sequencing

4286 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr1: 57923979-57924071 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR490
• miRBase Tracker:MI0003709

Mature sequence gga-miR-490-5p

• Accession: MIMAT0026633
• Sequence: 18 - ccauggaucuccaggugggu - 37
• Deep sequencing: 1033 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-490-5p
  • miRDB:gga-miR-490-5p

Mature sequence gga-miR-490-3p

• Accession: MIMAT0003366
• Sequence: 57 - caaccuggaggacuccaugcug - 78
• Deep sequencing: 3253 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-490-3p
  • miRDB:gga-miR-490-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).