miRBase entry: gga-mir-429

Stem-loop gga-mir-429


Accession
MI0003714
Description
Gallus gallus gga-mir-429 precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
8 open access papers mention gga-mir-429
(16 sentences)

Sequence

25881 reads, 421 reads per million, 5 experiments
gccugcugauugcUGUCUUACCAGGCAAAGUUAGAucuagcuauuucugucUAAUACUGUCUGGUAAUGCCGUcaaucgcaugg
.(((((.((((((.((.((((((((((..(((((((..((......)))))))))..)))))))))).)).).)))))))).))

Structure
g  -   u     - U  C          AA       cu  cu 
 cc ugc gauug c GU UUACCAGGCA  GUUAGAu  ag  a
 || ||| ||||| | || ||||||||||  |||||||  ||   
 gg acg cuaac G CG AAUGGUCUGU  UAAUcug  uc  u
-  u   -     U C  U          CA       --  uu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr21: 2589432-2589515 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-429
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-429-3p

Accession MIMAT0003371
Description Gallus gallus gga-miR-429-3p mature miRNA
Sequence 52 - UAAUACUGUCUGGUAAUGCCGU - 73
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature gga-miR-429-5p

Accession MIMAT0026635
Description Gallus gallus gga-miR-429-5p mature miRNA
Sequence 14 - UGUCUUACCAGGCAAAGUUAGA - 35
Evidence experimental
Illumina [1]
Database links
Predicted targets

References


  1. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45