miRBase entry: rno-mir-497

Stem-loop rno-mir-497


Accession
MI0003724
Description
Rattus norvegicus rno-mir-497 precursor miRNA
Gene family
MIPF0000231; mir-497

Literature search
20 open access papers mention rno-mir-497
(166 sentences)

Sequence

400068 reads, 426 reads per million, 489 experiments
cCAGCAGCACACUGUGGUUUGUAcggcacuguggccacguCCAAACCACACUGUGGUGUUAGAgcgagg
..((((.((((.(((((((((.(((((......)))..)).))))))))).)))).)))).........

Structure
-------cC    G    C         U  --   ac 
         AGCA CACA UGUGGUUUG Ac  ggc  u
         |||| |||| ||||||||| ||  |||   
         UUGU GUGU ACACCAAAC ug  ccg  g
ggagcgAGA    G    C         C  ca   gu 


Annotation confidence Not enough data
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Genome context
chr10: 56844977-56845045 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-497
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-497-5p

Accession MIMAT0003383
Description Rattus norvegicus rno-miR-497-5p mature miRNA
Sequence 2 - CAGCAGCACACUGUGGUUUGUA - 23
Evidence experimental
cloned [1-2], Northern [1], SOLiD [3]

Mature rno-miR-497-3p

Accession MIMAT0017230
Description Rattus norvegicus rno-miR-497-3p mature miRNA
Sequence 41 - CCAAACCACACUGUGGUGUUAGA - 63
Evidence experimental
SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249