miRBase entry: rlcv-mir-rL1-6

Stem-loop rlcv-mir-rL1-6


Accession
MI0003742
Description
Rhesus lymphocryptovirus rlcv-mir-rL1-6 precursor miRNA
Gene family
MIPF0000325; mir-BART1


Sequence

cccuuggugggUUUUAGUGGAAGUGACGUGCUGUgauuagguacccaUAGCACCGCUAUCCACUAUGUCUcaccaggg
.((((((((((...(((((((((((..((((((((..........)))))))))))).)))))))...))))))))))

Structure
c          UUU       -    AC        auua 
 ccuugguggg   UAGUGGA AGUG  GUGCUGUg    g
 ||||||||||   ||||||| ||||  ||||||||     
 gggaccacUC   AUCACCU UCGC  CACGAUac    g
-          UGU       A    --        ccau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rlcv-miR-rL1-6-5p

Accession MIMAT0003434
Description Rhesus lymphocryptovirus rlcv-miR-rL1-6-5p mature miRNA
Sequence 12 - UUUUAGUGGAAGUGACGUGCUGU - 34
Evidence experimental
cloned [1], Illumina [3-4]

Mature rlcv-miR-rL1-6-3p

Accession MIMAT0003435
Description Rhesus lymphocryptovirus rlcv-miR-rL1-6-3p mature miRNA
Sequence 48 - UAGCACCGCUAUCCACUAUGUCU - 70
Evidence experimental
cloned [1-2], Illumina [3-4]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16557291
    Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
    Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
    PLoS Pathog (2006) 2:e23

  3. PubMed ID: 20219930
    Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
    "Riley KJ, Rabinowitz GS, Steitz JA"
    "J Virol (2010) 84:5148-5157

  4. PubMed ID: 24257599
    Evolutionary conservation of primate lymphocryptovirus microRNA targets
    "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
    "J Virol (2014) 88:1617-1635