miRBase entry: rlcv-mir-rL1-13

Stem-loop rlcv-mir-rL1-13


Accession
MI0003749
Description
Rhesus lymphocryptovirus rlcv-mir-rL1-13 precursor miRNA
Gene family
MIPF0000328; mir-BART7


Sequence

cccgugucuugauCCUGGGCAUGGGCUAUGAAACAguucuaacaauugGAUCAUAGCCAGUGUCCAGGGAcggugcaccggg
(((((((.(((.((((((((((.((((((((..(((((.....)))))..)))))))).)))))))))).))).))).))))

Structure
    -   c   a          G        AA     c 
cccg ugu uug uCCUGGGCAU GGCUAUGA  CAguu u
|||| ||| ||| |||||||||| ||||||||  ||||| a
gggc acg ggc GGGACCUGUG CCGAUACU  guuaa a
    c   u   A          A        AG     c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rlcv-miR-rL1-13-3p

Accession MIMAT0003443
Description Rhesus lymphocryptovirus rlcv-miR-rL1-13-3p mature miRNA
Sequence 49 - GAUCAUAGCCAGUGUCCAGGGA - 70
Evidence experimental
cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-13-5p

Accession MIMAT0019090
Description Rhesus lymphocryptovirus rlcv-miR-rL1-13-5p mature miRNA
Sequence 14 - CCUGGGCAUGGGCUAUGAAACA - 35
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 16557291
    Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
    Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
    PLoS Pathog (2006) 2:e23

  2. PubMed ID: 20219930
    Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
    "Riley KJ, Rabinowitz GS, Steitz JA"
    "J Virol (2010) 84:5148-5157

  3. PubMed ID: 24257599
    Evolutionary conservation of primate lymphocryptovirus microRNA targets
    "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
    "J Virol (2014) 88:1617-1635