miRBase entry: hsa-mir-1271

Stem-loop hsa-mir-1271


Accession
MI0003814
Symbol
HGNC: MIR1271
Description
Homo sapiens hsa-mir-1271 precursor miRNA
Gene family
MIPF0000483; mir-1271

Summary
Caution, this is an AI generated summary based on literature. This may have errors. ?

MIR1271 is a tumor suppressor in hepatocellular carcinoma (HCC) [PMC7425487]. A negative correlation has been established between FOXK2 mRNA and MIR1271 in HCC patient samples [PMC6468357]. MIR1271 directly regulates CCNG1, a master tumor suppressor [PMC5772750]. In various tumors, MIR1271 also directly regulates LDHA, along with miR-200c, miR-449a, miR-30d-5p, miR-142-3p, and miR-383 [PMC9742379]. Bioinformatics analysis of the MIR1271 gene has identified genehancers using the genehancer v4.8 database [PMC8454712]. Additionally, in osteoarthritis (OA) progression, circSERPINE2 functions as a competing endogenous RNA (ceRNA) of MIR1271 to regulate the anabolism of the extracellular matrix (ECM) [PMC7393488].

Literature search
19 open access papers mention hsa-mir-1271
(34 sentences)

Sequence

15918 reads, 246 reads per million, 121 experiments
cacccagaucagugCUUGGCACCUAGCAAGCACUCAguaaauauuuguugAGUGCCUGCUAUGUGCCAGGCAuugugcugagggcu
..(((((..(((((((((((((.(((((.(((((((((((....))))))))))).))))).)))))))))))))..))).))...

Structure
-ca  -   au             C     A           a 
   cc cag  cagugCUUGGCAC UAGCA GCACUCAguaa u
   || |||  ||||||||||||| ||||| |||||||||||  
   gg guc  guuACGGACCGUG AUCGU CGUGAguuguu a
ucg  a   gu             U     C           u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr5: 176367946-176368031 [+]

Disease association
hsa-mir-1271 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-1271-5p

Accession MIMAT0005796
Description Homo sapiens hsa-miR-1271-5p mature miRNA
Sequence 15 - CUUGGCACCUAGCAAGCACUCA - 36
Evidence experimental
Illumina [2], 454 [3]
Database links
Predicted targets

Mature hsa-miR-1271-3p

Accession MIMAT0022712
Description Homo sapiens hsa-miR-1271-3p mature miRNA
Sequence 51 - AGUGCCUGCUAUGUGCCAGGCA - 72
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298

  2. PubMed ID: 18285502
    Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    "Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA"
    "Genome Res (2008) 18:610-621

  3. PubMed ID: 19508715
    Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing
    Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup N, Møller S, Krogh A, Litman T
    BMC Med Genomics (2009) 2:35