miRBase entry: mmu-mir-1247

Stem-loop mmu-mir-1247


Accession
MI0004120
Symbol
MGI: Mir1247
Description
Mus musculus mmu-mir-1247 precursor miRNA
Gene family
MIPF0000669; mir-1247

Literature search
3 open access papers mention mmu-mir-1247
(4 sentences)

Sequence

4528 reads, 132 reads per million, 67 experiments
cggccgccgggcgcACCCGUCCCGUUCGUCCCCGGAcguugcucucugcccCGGGAACGUCGAGACUGGAGCgcccgaacug
.......(((((((.((.(((.((..(((.(((((..((........)).))))).))).)).))).)).))))))).....

Structure
cggccgc       A  C   C  UU   C     Ac  ugc 
       cgggcgc CC GUC CG  CGU CCCGG  gu   u
       ||||||| || ||| ||  ||| |||||  ||    
       gcccgCG GG CAG GC  GCA GGGCc  cg   c
--gucaa       A  U   A  -U   A     -c  ucu 


Annotation confidence High
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Comments
This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context
chr12: 110278048-110278129 [-]

Database links

Mature mmu-miR-1247-5p

Accession MIMAT0014800
Description Mus musculus mmu-miR-1247-5p mature miRNA
Sequence 15 - ACCCGUCCCGUUCGUCCCCGGA - 36
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mmu-miR-1247-3p

Accession MIMAT0014801
Description Mus musculus mmu-miR-1247-3p mature miRNA
Sequence 52 - CGGGAACGUCGAGACUGGAGC - 72
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298