miRBase entry: mmu-mir-770

Stem-loop mmu-mir-770


Accession
MI0004203
Symbol
MGI: Mir770
Description
Mus musculus mmu-mir-770 precursor miRNA
Gene family
MIPF0000355; mir-770

Literature search
7 open access papers mention mmu-mir-770
(104 sentences)

Sequence

43116 reads, 212 reads per million, 56 experiments
gccaccuucugugcccccAGCACCACGUGUCUGGGCCACGugagcaacgccaCGUGGGCCUGACGUGGAGCUGGggccgcaggggucugauggc
(((((((((((((.(((((((.((((((....((.(((((((.((...))))))))).))..)))))).))))))).))))))))...).))))

Structure
    - ---        c       A      GUCU  G       a  a 
gcca c   cuucugug ccccAGC CCACGU    GG CCACGug gc  
|||| |   |||||||| ||||||| ||||||    || ||||||| || a
cggu g   ggggacgc ggGGUCG GGUGCA    CC GGUGCac cg  
    a ucu        c       A      --GU  G       -  c 


Annotation confidence High
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Genome context
chr12: 109563692-109563785 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-770
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-770-5p

Accession MIMAT0004822
Description Mus musculus mmu-miR-770-5p mature miRNA
Sequence 19 - AGCACCACGUGUCUGGGCCACG - 40
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-770-3p

Accession MIMAT0003891
Description Mus musculus mmu-miR-770-3p mature miRNA
Sequence 53 - CGUGGGCCUGACGUGGAGCUGG - 74
Evidence experimental
cloned [1-2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298