Stem-loop sequence mmu-mir-802

Accession

MI0004249 (change log)

Symbol

MGI:Mir802

Description

Mus musculus miR-802 stem-loop

Gene family

MIPF0000353; mir-802

Literature search

20 open access papers mention mmu-mir-802
(136 sentences)

Stem-loop

   ------  uc      u     auc   a          a   ---      c 
5'       gg  cuauua uugca   agu acaaagauuc ucc   uugugu a
         ||  |||||| |||||   ||| |||||||||| |||   |||||| a
3'       cc  gauaau aaugu   uca uguuucugag agg   aacaua u
   ccacuu  --      u     gac   c          -   cac      c 

Deep sequencing

3302 reads, 15.6 reads per million, 32 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr16: 93369720-93369816 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir802
• MGI:Mir802
• RNAcentral:URS000075A418_10090
• miRBase Tracker:MI0004249

Mature sequence mmu-miR-802-5p

• Accession: MIMAT0004188
• Previous IDs: mmu-miR-802
• Sequence: 18 - ucaguaacaaagauucauccuu - 39
• Deep sequencing: 1462 reads, 28 experiments
• Evidence: experimental; miRAP-cloned [1], cloned [2], Illumina [3]
• Database links:
  • RNAcentral:URS00005B2C05_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-802-5p
  • miRDB:mmu-miR-802-5p
  • microrna.org:mmu-miR-802-5p

Mature sequence mmu-miR-802-3p

• Accession: MIMAT0017240
• Previous IDs: mmu-miR-802*
• Sequence: 56 - acggagagucuuugucacucag - 77
• Deep sequencing: 1840 reads, 23 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00004EA7C8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-802-3p
  • miRDB:mmu-miR-802-3p

References

1. PMID:16973894 "Mouse microRNA profiles determined with a new and sensitive cloning method" Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H Nucleic Acids Res. 34:e115(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).