miRBase entry: mmu-mir-3059

Stem-loop mmu-mir-3059


Accession
MI0004412
Symbol
MGI: Mir3059
Description
Mus musculus mmu-mir-3059 precursor miRNA
Gene family
MIPF0001766; mir-3059

Literature search
1 open access papers mention mmu-mir-3059
(1 sentences)

Sequence

577 reads, 25 reads per million, 20 experiments
ggugguacgcccUUUCCUCUCUGCCCCAUAGGGUguagcucuaacuacCCUCUAGGGAAGAGAAGGUUGGgugaacagccu
(((.((.(((((...(((((((..(((.(((((.((((......)))).)))))))).)))).)))..))))).)).))).

Structure
-   g  a     UUU   -    GC   A     U    cu 
 ggu gu cgccc   CCU CUCU  CCC UAGGG guag  c
 ||| || |||||   ||| ||||  ||| ||||| ||||   
 ccg ca gugGG   GGA GAGA  GGG AUCUC cauc  u
u   a  a     -UU   A    -A   -     C    aa 


Annotation confidence High
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Comments
This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context
chr10: 101772692-101772772 [+]

Database links

Mature mmu-miR-3059-5p

Accession MIMAT0014811
Description Mus musculus mmu-miR-3059-5p mature miRNA
Sequence 13 - UUUCCUCUCUGCCCCAUAGGGU - 34
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mmu-miR-3059-3p

Accession MIMAT0014812
Description Mus musculus mmu-miR-3059-3p mature miRNA
Sequence 49 - CCUCUAGGGAAGAGAAGGUUGG - 70
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298