Stem-loop sequence mmu-mir-3099

Accession

MI0004485 (change log)

Symbol

MGI:Mir3099

Description

Mus musculus miR-3099 stem-loop

Gene family

MIPF0001559; mir-3099

Literature search

5 open access papers mention mmu-mir-3099
(70 sentences)

Stem-loop

      ga          -      c   c    cu  a   uuu 
5' auc  uccccauccc agcuuc uuc agcc  ug ugu   a
   |||  |||||||||| |||||| ||| ||||  || |||    
3' uag  agggguaggg uuggag gag ucgg  ac acg   g
      aa          g      a   a    au  -   cau 

Deep sequencing

30263 reads, 154 reads per million, 56 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 6803587-6803670 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir3099
• MGI:Mir3099
• RNAcentral:URS000075AFD9_10090
• miRBase Tracker:MI0004485

Mature sequence mmu-miR-3099-5p

• Accession: MIMAT0014815
• Previous IDs: mmu-miR-3099*
• Sequence: 14 - ccagcuuccuuccagcccuug - 34
• Deep sequencing: 9 reads, 7 experiments
• Evidence: experimental; Illumina [2-3]
• Database links:
  • RNAcentral:URS0000356E06_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3099-5p
  • miRDB:mmu-miR-3099-5p
  • microrna.org:mmu-miR-3099-5p

Mature sequence mmu-miR-3099-3p

• Accession: MIMAT0014816
• Previous IDs: mmu-miR-3099
• Sequence: 52 - uaggcuagagagagguugggga - 73
• Deep sequencing: 30243 reads, 51 experiments
• Evidence: experimental; Illumina [2-3]
• Database links:
  • RNAcentral:URS00001BB574_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3099-3p
  • miRDB:mmu-miR-3099-3p
  • microrna.org:mmu-miR-3099-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).