miRBase entry: mmu-mir-3099

Stem-loop mmu-mir-3099


Accession
MI0004485
Symbol
MGI: Mir3099
Description
Mus musculus mmu-mir-3099 precursor miRNA
Gene family
MIPF0001559; mir-3099

Literature search
5 open access papers mention mmu-mir-3099
(70 sentences)

Sequence

3688 reads, 62 reads per million, 44 experiments
aucgauccccaucCCAGCUUCCUUCCAGCCCUUGauguuuuaguacgcacaUAGGCUAGAGAGAGGUUGGGGAuggggaaagau
(((..((((((((((((((((.(((.((((..((.(((........)))))..)))).))).)))))).))))))))))..)))

Structure
   ga          -      C   C    CU  a   uuu 
auc  uccccaucCC AGCUUC UUC AGCC  UG ugu   a
|||  |||||||||| |||||| ||| ||||  || |||    
uag  agggguAGGG UUGGAG GAG UCGG  ac acg   g
   aa          G      A   A    AU  -   cau 


Annotation confidence Not enough data
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Comments
This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context
chr7: 6803587-6803670 [+]

Database links

Mature mmu-miR-3099-5p

Accession MIMAT0014815
Description Mus musculus mmu-miR-3099-5p mature miRNA
Sequence 14 - CCAGCUUCCUUCCAGCCCUUG - 34
Evidence experimental
Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-3099-3p

Accession MIMAT0014816
Description Mus musculus mmu-miR-3099-3p mature miRNA
Sequence 52 - UAGGCUAGAGAGAGGUUGGGGA - 73
Evidence experimental
Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298