Stem-loop mmu-mir-3106

Accession

MI0004486

Symbol

MGI: Mir3106

Description

Mus musculus mmu-mir-3106 precursor miRNA

Sequence

583 reads, 45 reads per million, 30 experiments

agggaagcacaggUGGCUCAUUUAGAAGCAGCCAuacacucagagagugGCUGCCUAUACAUGGGCUUUCCugugcuccucu
.((((.(((((((.(((((((.((...((((((((...........))))))))...)).)))))))..)))))))))))..

Structure

-a    a       -U       U  GAA        acac 
  ggga gcacagg  GGCUCAU UA   GCAGCCAu    u
  |||| |||||||  ||||||| ||   ||||||||    c
  uccu cguguCC  UCGGGUA AU   CGUCGgug    a
uc    -       UU       C  AUC        agag 

Annotation confidence Not enough data

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

chr8: 16168757-16168838 [-]

Mature mmu-miR-3106-5p

• Accession: MIMAT0014817
• Description: Mus musculus mmu-miR-3106-5p mature miRNA
• Sequence: 14 - UGGCUCAUUUAGAAGCAGCCA - 34
• Evidence: experimental ; Illumina [2]

Mature mmu-miR-3106-3p

• Accession: MIMAT0014818
• Description: Mus musculus mmu-miR-3106-3p mature miRNA
• Sequence: 50 - GCUGCCUAUACAUGGGCUUUCC - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


2. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298