Stem-loop sequence mmu-mir-344d-1

Accession

MI0004524 (change log)

Symbol

MGI:Mir344d-1

Description

Mus musculus miR-344d-1 stem-loop

Gene family

MIPF0000267; mir-344

Literature search

10 open access papers mention mmu-mir-344d-1
(34 sentences)

Stem-loop

   --a      a   u c   c    ca        u 
5'    ucaguc ggc g ugg uaua  ccaggacu a
      |||||| ||| | ||| ||||  |||||||| u
3'    agucag ccg c acc auau  gguccugg c
   gaa      a   u -   a    -a        u 

Deep sequencing

11079 reads, 9.09 reads per million, 44 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 61683124-61683192 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-344d-1

• mmu-mir-344d-2: chr7: 61685272-61685351 [-]
• mmu-mir-344d-1: chr7: 61683124-61683192 [-]

Database links

• EntrezGene:Mir344d-1
• MGI:Mir344d-1
• RNAcentral:URS000075BE2B_10090
• miRBase Tracker:MI0004524

Mature sequence mmu-miR-344d-1-5p

• Accession: MIMAT0014819
• Previous IDs: mmu-miR-344d-1*
• Sequence: 4 - agucaggcugcuggcuauacacca - 27
• Deep sequencing: 19 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00002B6ECA_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-344d-1-5p
  • miRDB:mmu-miR-344d-1-5p

Mature sequence mmu-miR-344d-3p

• Accession: MIMAT0014808
• Previous IDs: mmu-miR-344d
• Sequence: 45 - gauauaaccacugccagacuga - 66
• Deep sequencing: 33184 reads, 47 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00003FE584_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-344d-3p
  • miRDB:mmu-miR-344d-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).