miRBase entry: bta-mir-125a

Stem-loop bta-mir-125a


Accession
MI0004752
Description
Bos taurus bta-mir-125a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
13 open access papers mention bta-mir-125a
(19 sentences)

Sequence

179448 reads, 2184 reads per million, 78 experiments
ugccggccucugcgUCCCUGAGACCCUUUAACCUGUGaggacguccagggucacaggugagguucuugggagccuggcguccggcc
.((((((((..((.((((.((((.((((..((((((((...(.....)..)))))))))))).))))))))))..)).).))))).

Structure
u     - -  cu  g    U    C    UA        gga g 
 gccgg c cu  gc UCCC GAGA CCUU  ACCUGUGa   c u
 ||||| | ||  || |||| |||| ||||  ||||||||   | c
 cggcc g gg  cg aggg uucu ggag  uggacacu   g c
c     u c  uc  -    -    u    --        -gg a 


Annotation confidence High
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Genome context
chr18: 58267247-58267332 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-125a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-125a

Accession MIMAT0003538
Description Bos taurus bta-miR-125a mature miRNA
Sequence 15 - UCCCUGAGACCCUUUAACCUGUG - 37
Evidence experimental
cloned [1-2], Array [3], qRT-PCR [3]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677