Stem-loop sequence dre-mir-190b

Accession

MI0004764 (change log)

Description

Danio rerio miR-190b stem-loop

Gene family

MIPF0000076; mir-190

Literature search

5 open access papers mention dre-mir-190b
(9 sentences)

Stem-loop

   u       a    - ug              cg    - uuucuu 
5'  guuacag cuau g  auauguuugauauu  guug c      u
    ||||||| |||| |  ||||||||||||||  |||| |       
3'  caguguc gaua c  uauacagacuauaa  caac g      a
   a       a    u cu              au    u uacuau 

Deep sequencing

546 reads, 33.3 reads per million, 9 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr16: 17705898-17705987 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir190b
• EntrezGene:mir190b
• RNAcentral:URS000070D792_7955
• miRBase Tracker:MI0004764

Mature sequence dre-miR-190b

• Accession: MIMAT0003747
• Sequence: 15 - ugauauguuugauauucgguug - 36
• Deep sequencing: 546 reads, 9 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS000075DE35_7955
• Predicted targets:
  • TargetScanFish:dre-miR-190b

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).