Stem-loop sequence dre-mir-722

Accession

MI0004765 (change log)

Description

Danio rerio miR-722 stem-loop

Gene family

MIPF0001612; mir-722

Literature search

2 open access papers mention dre-mir-722
(70 sentences)

Stem-loop

                              g  c      g ---a  c 
5' ggaacggaguggaauuugaaacguuuu gc aaaaau u    gc a
   ||||||||||||||||||||||||||| || |||||| |    ||  
3' ucuugccucgcuuuagacuuugcaaag cg uuuuug g    cg u
                              a  u      g gaaa  g 

Deep sequencing

908 reads, 18.2 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr1: 56363884-56363974 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir722
• EntrezGene:mir722
• RNAcentral:URS0000759DA1_7955
• miRBase Tracker:MI0004765

Mature sequence dre-miR-722

• Accession: MIMAT0003748
• Sequence: 56 - uuuuuugcagaaacguuucagauu - 79
• Deep sequencing: 845 reads, 10 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS000075D124_7955
• Predicted targets:
  • TargetScanFish:dre-miR-722

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).