Stem-loop sequence dre-mir-727

Accession

MI0004771 (change log)

Description

Danio rerio miR-727 stem-loop

Gene family

MIPF0001371; mir-727

Literature search

1 open access papers mention dre-mir-727
(2 sentences)

Stem-loop

          u      c            cu  -    ccg   ccau 
5' cuguaug cauuuu agucuucaauuc  cc cagc   uac    c
   ||||||| |||||| ||||||||||||  || ||||   |||    g
3' gacaugu gugaaa ucagaaguugag  gg guug   gug    a
          c      u            -c  a    --a   ucaa 

Deep sequencing

333 reads, 0 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr24: 26185410-26185500 [+]
• Overlapping transcripts:

  sense

  OTTDART00000044624 ; tmtopsb-001; intron 3

  ENSDART00000139017 ; tmtopsb-001; intron 3

  ENSDART00000038824 ; tmtopsb-201; intron 3

Clustered miRNAs

< 10kb from dre-mir-727

• dre-mir-727: chr24: 26185410-26185500 [+]
• dre-mir-728: chr24: 26190552-26190634 [+]

Database links

• EntrezGene:mir727
• EntrezGene:mir727
• RNAcentral:URS000075E050_7955
• miRBase Tracker:MI0004771

Mature sequence dre-miR-727-5p

• Accession: MIMAT0003755
• Previous IDs: dre-miR-727*
• Sequence: 14 - ucagucuucaauuccucccagc - 35
• Deep sequencing: 8 reads, 5 experiments
• Evidence: experimental; cloned [1], Northern [1]

Mature sequence dre-miR-727-3p

• Accession: MIMAT0003756
• Previous IDs: dre-miR-727
• Sequence: 57 - guugaggcgaguugaagacuua - 78
• Deep sequencing: 325 reads, 10 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS000075CAAC_7955
• Predicted targets:
  • TargetScanFish:dre-miR-727

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).