miRBase entry: dre-mir-728

Stem-loop dre-mir-728


Accession
MI0004772
Description
Danio rerio dre-mir-728 precursor miRNA
Gene family
MIPF0001670; mir-728


Sequence

8 reads, 16 reads per million, 2 experiments
caucuucugaggaaauguaguagacuauaaguauacagugaacaugaacguAUACUAAGUACACUACGUUUUCucaagaggug
((((((.((((((((((((((..(((...(((((((.((........))))))))).)))..)))))))))))))).))))))

Structure
      c              ag   aua       a  gaa 
caucuu ugaggaaauguagu  acu   aguauac gu   c
|||||| ||||||||||||||  |||   ||||||| ||    
guggag acuCUUUUGCAUCA  UGA   UCAUAug ca   a
      a              CA   --A       -  agu 


Annotation confidence Not enough data
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Genome context
chr24: 26190552-26190634 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-728
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-728

Accession MIMAT0003757
Description Danio rerio dre-miR-728 mature miRNA
Sequence 52 - AUACUAAGUACACUACGUUUUC - 73
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 16698962
    Cloning and expression of new microRNAs from zebrafish
    "Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
    "Nucleic Acids Res (2006) 34:2558-2569