Stem-loop sequence dre-mir-729

Accession

MI0004773 (change log)

Description

Danio rerio miR-729 stem-loop

Gene family

MIPF0001307; mir-729

Stem-loop

       aagg     c a          g      ug  a   a  uguaagu 
5' cguc    gccau c gugacccggg uuguau  ua cca gc       g
   ||||    ||||| | |||||||||| ||||||  || ||| ||        
3' guag    uggua g cauugggucc agcaua  au ggu cg       u
       ----     a a          -      gu  g   a  uaguacc 

Deep sequencing

71 reads, 0 reads per million, 9 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr4: 13584483-13584581 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir729
• EntrezGene:mir729
• RNAcentral:URS000075C0C5_7955
• miRBase Tracker:MI0004773

Mature sequence dre-miR-729

• Accession: MIMAT0003758
• Sequence: 62 - cauggguaugauacgaccuggguu - 85
• Deep sequencing: 58 reads, 8 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS000075E70B_7955
• Predicted targets:
  • TargetScanFish:dre-miR-729

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).