Stem-loop sequence dre-mir-733

Accession

MI0004778 (change log)

Description

Danio rerio miR-733 stem-loop

Literature search

1 open access papers mention dre-mir-733
(1 sentences)

Stem-loop

   u   uuuu   ua   -   c  uu c        agc    u      u 
5'  ggc    ccg  gug ucg ug  g guugguuu   ucag gguuac u
    |||    |||  ||| ||| ||  | ||||||||   |||| ||||||  
3'  ccg    ggc  cac ggu ac  u caacuaaa   aguc cuagug c
   a   ---u   uc   u   -  uu c        --a    c      u 

Deep sequencing

553 reads, 0 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr14: 2406978-2407072 [-]
• Overlapping transcripts:

  sense

  ENSDART00000121948 ; Vault.4-201; exon 1

Database links

• EntrezGene:mir733
• RNAcentral:URS000075ECD2_7955
• miRBase Tracker:MI0004778

Mature sequence dre-miR-733

• Accession: MIMAT0003763
• Sequence: 24 - ugcguugguuuagcucagugguu - 46
• Deep sequencing: 443 reads, 11 experiments
• Evidence: experimental; cloned [1], in-situ [1], Northern [1]
• Database links:
  • RNAcentral:URS000075AC07_7955
• Predicted targets:
  • TargetScanFish:dre-miR-733

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).