miRBase entry: dre-mir-15c

Stem-loop dre-mir-15c

Accession

MI0004779

Description

Danio rerio dre-mir-15c precursor miRNA mir-15

Gene
family?

RF00455; mir-15

Literature search

4 open access papers mention dre-mir-15c
(8 sentences)

Sequence

13325 reads, 655 reads per million, 11 experiments

ccuuagaccgcuaAAGCAGCGCGUCAUGGUUUUCaacauuagagaaggugcaagccaucauuugcugcucuagaguuuuaagg
(((((((.(.(((.(((((((.((.(((((((.((.(.........).)).))))))).)).))))))).))).).)))))))

Structure

       c g   A       C  C       U  a auu 
ccuuaga c cua AGCAGCG GU AUGGUUU Ca c   a
||||||| | ||| ||||||| || ||||||| || |   g
ggaauuu g gau ucgucgu ua uaccgaa gu g   a
       u a   c       u  c       c  g aag

Annotation confidence High

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Genome context

chr15: 1543686-1543768 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-15c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-15c

Accession	MIMAT0003764
Description	Danio rerio dre-miR-15c mature miRNA
Sequence	14 - AAGCAGCGCGUCAUGGUUUUC - 34
Evidence	experimental cloned [1], Northern [1]
Database links
Predicted targets

References

PubMed ID: 16698962
Cloning and expression of new microRNAs from zebrafish
"Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
"Nucleic Acids Res (2006) 34:2558-2569