Stem-loop sequence dre-mir-15c

Accession

MI0004779 (change log)

Description

Danio rerio miR-15c stem-loop

Gene family

MIPF0000006; mir-15

Literature search

4 open access papers mention dre-mir-15c
(8 sentences)

Stem-loop

          c g   a       c  c       u  aca  a 
5' ccuuaga c cua agcagcg gu augguuu ca   uu g
   ||||||| | ||| ||||||| || ||||||| ||   ||  
3' ggaauuu g gau ucgucgu ua uaccgaa gu   aa a
          u a   c       u  c       c  -gg  g 

Deep sequencing

14945 reads, 609 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr15: 1543686-1543768 [+]
• Overlapping transcripts:

  sense

  OTTDART00000025942 ; smc4-001; intron 5

  ENSDART00000130413 ; smc4-001; intron 5

  ENSDART00000056765 ; smc4-201; intron 5

Clustered miRNAs

< 10kb from dre-mir-15c

• dre-mir-15c: chr15: 1543686-1543768 [+]
• dre-mir-16a: chr15: 1543857-1543943 [+]

Database links

• EntrezGene:mir15c
• EntrezGene:mir15c
• RNAcentral:URS000075B728_7955
• miRBase Tracker:MI0004779

Mature sequence dre-miR-15c

• Accession: MIMAT0003764
• Sequence: 14 - aagcagcgcgucaugguuuuc - 34
• Deep sequencing: 14896 reads, 11 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS000075ECBB_7955
• Predicted targets:
  • TargetScanFish:dre-miR-15c

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).