Stem-loop sequence dre-mir-734

Accession

MI0004780 (change log)

Description

Danio rerio miR-734 stem-loop

Gene family

MIPF0001543; mir-734

Literature search

2 open access papers mention dre-mir-734
(2 sentences)

Stem-loop

   u     ug     u a  c            ggc     gugga   u 
5'  gauau  agagc g ac auucugcagcau   ugccu     ucc c
    |||||  ||||| | || ||||||||||||   |||||     ||| u
3'  cuaug  ucuug c ug uaagacgucgua   augga     agg g
   a     gu     c a  c            --a     ----a   g 

Deep sequencing

96 reads, 0 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr1: 34122880-34122972 [+]	sense OTTDART00000030233 ; epha6-001; intron 3 ENSDART00000146530 ; epha6-001; intron 3 ENSDART00000042984 ; epha6-201; intron 3
KZ114845.1: 145395-145487 [+]	sense OTTDART00000030233 ; epha6-001; intron 3 ENSDART00000146530 ; epha6-001; intron 3 ENSDART00000042984 ; epha6-201; intron 3
KZ115032.1: 270388-270480 [+]	sense OTTDART00000030233 ; epha6-001; intron 3 ENSDART00000146530 ; epha6-001; intron 3 ENSDART00000042984 ; epha6-201; intron 3

Database links

• EntrezGene:mir734
• EntrezGene:mir734
• RNAcentral:URS000075AB3D_7955
• miRBase Tracker:MI0004780

Mature sequence dre-miR-734

• Accession: MIMAT0003765
• Sequence: 59 - guaaaugcugcagaaucguaccg - 81
• Deep sequencing: 95 reads, 11 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS000075C917_7955
• Predicted targets:
  • TargetScanFish:dre-miR-734

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).