miRBase entry: xtr-mir-9a-1

Stem-loop xtr-mir-9a-1


Accession
MI0004793
Description
Xenopus tropicalis xtr-mir-9a-1 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
1 open access papers mention xtr-mir-9a-1
(1 sentences)

Sequence

gggguugguuguuaUCUUUGGUUAUCUAGCUGUAUGAguguugucaauccuucaUAAAGCUAGAUAACCGAAAGUaaaaauaacccca
(((((((....((((.(((((((((((((((.((((((.(........).)))))).))))))))))))))).))))...))))))).

Structure
-       guug    C               G      u uug 
 gggguug    uuaU UUUGGUUAUCUAGCU UAUGAg g   u
 |||||||    |||| ||||||||||||||| |||||| |    
 ccccaau    aaUG AAGCCAAUAGAUCGA AUacuu c   c
a       -aaa    A               A      c uaa 


Annotation confidence Not enough data
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Genome context
chr8: 111349795-111349882 [+]

Database links

Mature xtr-miR-9a-3p

Accession MIMAT0003554
Description Xenopus tropicalis xtr-miR-9a-3p mature miRNA
Sequence 55 - UAAAGCUAGAUAACCGAAAGU - 75
Evidence experimental
Northern [1]

Mature xtr-miR-9a-5p

Accession MIMAT0003553
Description Xenopus tropicalis xtr-miR-9a-5p mature miRNA
Sequence 15 - UCUUUGGUUAUCUAGCUGUAUGA - 37
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112