miRBase entry: xtr-mir-99

Stem-loop xtr-mir-99


Accession
MI0004821
Description
Xenopus tropicalis xtr-mir-99 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

uaacauaAACCCGUAGAUCCGAUCUUGUGgugaauuccuuugcucaagcucguuucuaugggucuguguca
..(((((.(((((((((..(((.((((.((((((....)))))))))).)))..))))))))).)))))..

Structure
ua     A         UC   U    U      u 
  acaua ACCCGUAGA  CGA CUUG Ggugaa u
  ||||| |||||||||  ||| |||| ||||||  
  ugugu uggguaucu  gcu gaac ucguuu c
ac     c         uu   c    -      c 


Annotation confidence Not enough data
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Genome context
chr2: 23121034-23121104 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from xtr-mir-99
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-99

Accession MIMAT0003582
Description Xenopus tropicalis xtr-miR-99 mature miRNA
Sequence 8 - AACCCGUAGAUCCGAUCUUGUG - 29
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112