miRBase entry: xtr-let-7f

Stem-loop xtr-let-7f


Accession
MI0004887
Description
Xenopus tropicalis xtr-let-7f precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

ugcaggaUGAGGUAGUAGAUUGUAUAGUUuuggggucacacccgaucugggagauaacuauacaguuuacugucuuuccugcg
.((((((.((((((((((((((((((((((((((......)))))..........))))))))))))))))))))))))))).

Structure
u      U                     ----------     gu 
 gcagga GAGGUAGUAGAUUGUAUAGUU          uuggg  c
 |||||| |||||||||||||||||||||          |||||   
 cguccu uucugucauuugacauaucaa          agccc  a
g      -                     uagagggucu     ac 


Annotation confidence Not enough data
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Genome context
chr8: 8410819-8410901 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from xtr-let-7f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-let-7f

Accession MIMAT0003645
Description Xenopus tropicalis xtr-let-7f mature miRNA
Sequence 8 - UGAGGUAGUAGAUUGUAUAGUU - 29
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112