miRBase entry: xtr-mir-143

Stem-loop xtr-mir-143


Accession
MI0004937
Description
Xenopus tropicalis xtr-mir-143 precursor miRNA
Gene family
MIPF0000094; mir-143


Sequence

ugucucccagcccaaggugcagugcugcaucucuggucaguugugagucUGAGAUGAAGCACUGUAGCUCGggaagggggaau
..((((((..(((.((.(((((((((.((((((.(((((....))).)).)))))).))))))))).)).)))..))))))..

Structure
ug      ag   a  g         g      u  -   g 
  ucuccc  ccc ag ugcagugcu caucuc gg uca u
  ||||||  ||| || ||||||||| |||||| || |||  
  aggggg  ggG UC AUGUCACGA GUAGAG cu agu u
ua      aa   C  G         A      U  g   g 


Annotation confidence Not enough data
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Genome context
chr3: 31806258-31806340 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from xtr-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-143

Accession MIMAT0003686
Description Xenopus tropicalis xtr-miR-143 mature miRNA
Sequence 50 - UGAGAUGAAGCACUGUAGCUCG - 71
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112