Stem-loop sequence bmo-mir-277

Accession

MI0004981 (change log)

Description

Bombyx mori miR-277 stem-loop

Gene family

MIPF0000156; mir-277

Literature search

5 open access papers mention bmo-mir-277
(32 sentences)

Stem-loop

   -   -au             -          -            aagag cc     guu    u 
5'  uug   uacgccucggggu ucgugccagg agugcguuugca     g  gacau   ugcg u
    |||   ||||||||||||| |||||||||| ||||||||||||     |  |||||   ||||  
3'  aac   gugcggggcccua agcauggucu ucacguaaaugu     c  uugua   acgu a
   c   gau             c          a            ---ca aa     ---    u 

Deep sequencing

3291 reads, 500 reads per million, 3 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004581681.1: 3821386-3821507 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-277

• bmo-mir-277: NW_004581681.1: 3821386-3821507 [-]
• bmo-mir-34: NW_004581681.1: 3813355-3813452 [-]

Database links

• miRBase Tracker:MI0004981

Mature sequence bmo-miR-277-5p

• Accession: MIMAT0015233
• Previous IDs: bmo-miR-277*
• Sequence: 19 - ucgugccaggagugcguuugc - 39
• Deep sequencing: 24 reads, 3 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS0000286F31_7091

Mature sequence bmo-miR-277-3p

• Accession: MIMAT0004203
• Previous IDs: bmo-miR-277
• Sequence: 81 - uaaaugcacuaucugguacgaca - 103
• Deep sequencing: 3265 reads, 3 experiments
• Evidence: experimental; Northern [2], RT-PCR [3], Illumina [4]
• Database links:
  • RNAcentral:URS00001B9842_7091

References

1. PMID:16972323 "Computational prediction of microRNA genes in silkworm genome" Tong CZ, Jin YF, Zhang YZ J Zhejiang Univ Sci B. 7:806-816(2006).
2. PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
3. PMID:18977439 "Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system" Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y Insect Biochem Mol Biol. 38:1066-1071(2008).
4. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).