Stem-loop sequence bmo-mir-279a

Accession

MI0004982 (change log)

Previous IDs

bmo-mir-279

Description

Bombyx mori miR-279a stem-loop

Gene family

MIPF0000184; mir-279

Literature search

8 open access papers mention bmo-mir-279a
(13 sentences)

Stem-loop

   a  u        uuc        ga        g    uuua 
5'  cg caauuucu   gaugagug  gguuuagu caug    u
    || ||||||||   ||||||||  |||||||| ||||    u
3'  gc guugaagg   cuacucac  cuagauca guac    u
   a  -        uac        ac        -    caca 

Deep sequencing

88745 reads, 1.61e+04 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004581691.1: 11805-11889 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0004982

Mature sequence bmo-miR-279a

• Accession: MIMAT0004204
• Previous IDs: bmo-miR-279
• Sequence: 52 - ugacuagauccacacucau - 70
• Deep sequencing: 88735 reads, 3 experiments
• Evidence: experimental; Northern [2], RT-PCR [3], Illumina [4]
• Database links:
  • RNAcentral:URS000052AE9B_7091

References

1. PMID:16972323 "Computational prediction of microRNA genes in silkworm genome" Tong CZ, Jin YF, Zhang YZ J Zhejiang Univ Sci B. 7:806-816(2006).
2. PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
3. PMID:18977439 "Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system" Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y Insect Biochem Mol Biol. 38:1066-1071(2008).
4. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).