Stem-loop bmo-mir-305

Accession

MI0004985

Description

Bombyx mori bmo-mir-305 precursor miRNA

Gene family

MIPF0000158; mir-305

Literature search

7 open access papers mention bmo-mir-305
(28 sentences)

Sequence

955 reads, 191 reads per million, 3 experiments

cgaccgccgcacgcccAUUGUACUUCAUCAGGUGCUCUGgugaucauaguuccaGGCGCUUGUUGGAGUACACUUaccgugucggcgguua
.((((((((((((.....(((((((((.(((((((.((((...........))))))))))).))))))))).....)))).)))))))).

Structure

c        -    cccAU         U       U    ugau 
 gaccgccg cacg     UGUACUUCA CAGGUGC CUGg    c
 |||||||| ||||     ||||||||| ||||||| ||||    a
 uuggcggc gugc     ACAUGAGGU GUUCGCG Gacc    u
a        u    caUUC         U       -    uuga 

Annotation confidence High

Genome context

NW_004582013.1: 1926822-1926912 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-305

Mature bmo-miR-305-5p

• Accession: MIMAT0004207
• Description: Bombyx mori bmo-miR-305-5p mature miRNA
• Sequence: 17 - AUUGUACUUCAUCAGGUGCUCUG - 39
• Evidence: experimental ; Illumina [3]

Mature bmo-miR-305-3p

• Accession: MIMAT0015236
• Description: Bombyx mori bmo-miR-305-3p mature miRNA
• Sequence: 55 - GGCGCUUGUUGGAGUACACUU - 75
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148